Reproducibility in 2023 - An end-to-end template for analysis and manuscript writing Har passerat
Torsdag 25 maj 2023 08:30 - 08:45 G2
Föreläsare: Jonathan Mang
Spår: MIE: Special Topic: Caring is Sharing - exploiting value in data for health and innovation
Reproducibility imposes some special requirements at different stages of each project, including reproducible workflows for the analysis including to follow best practices regarding code style and to make the creation of the manuscript reproducible as well. Available tools therefore include version control systems such as Git and document creation tools such as Quarto or R Markdown. However, a re-usable project template mapping the entire process from performing the data analysis to finally writing the manuscript in a reproducible manner is yet lacking. This work aims to fill this gap by presenting an open source template for conducting reproducible research projects utilizing a containerized framework for both developing and conducting the analysis and summarizing the results in a manuscript. This template can be used instantly without any customization.
Språk
English
Seminarietyp
Enbart på plats
Föreläsningssyfte
Verktyg för implementering
Kunskapsnivå
Fördjupning
Målgrupp
Tekniker/IT/Utvecklare
Forskare (även studerande)
Studerande
Nyckelord
Exempel från verkligheten (goda/dåliga)
Utbildning (utbildningsbevis)
Innovativ/forskning
Dokumentation
Konferens
MIE
Författare
Jonathan Mang, Hans-Ulrich Prokosch, Lorenz Kapsner
Föreläsare
Jonathan Mang Föreläsare
Researcher / Medical Data Scientist
Friedrich-Alexander University Erlangen-Nürnberg, Germany
Medical engineer and data scientist @ University hospital Erlangen, Germany and @Chair of Medical Informatics, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU)