Huvudbild för Vitalis 2025

How to get started with OMOP and join the OHDSI community – learnings from Helsinki University Hospital

Tisdag 20 maj 2025 13:30 - 13:50 Vitalis Plaza

Föreläsare: Eric Fey

Spår: Introduction to OMOP

Building on the OMOP 101 session, this presentation shifts from why OMOP to HOW to implement it. Organizations looking to adopt the OMOP Common Data Model (CDM) need to understand the technical, organizational, and collaborative steps involved.

Using Helsinki University Hospital (HUS) as a case study, this session provides a presentation of HUS roadmap to OMOP adoption—from data ingestion and ETL to quality control, the first federated real-world study to predictive models using advanced swarm learning.

From Theory to Practice:

  • Preparation & Planning – Assess existing data infrastructure, define objectives, and engage stakeholders.
  • Data harmonization in three steps:
    • Data discovery – Prepare raw data (Data analysts)
    • Concept mapping of data – identify OMOP concepts for the source data (Clinical experts)
    • ETL (Extract, Transform, Load) – Harmonize data into the OMOP CDM format (Data engineers)
  • Data Quality & Validation – Implement verification and iterative testing to ensure reliability.
  • Establishing analytical capabilities
    • Infrastructure & Tools – Leverage OHDSI’s open-source ecosystem, including Atlas and WhiteRabbit.
    • Training & Community Engagement – Build a multidisciplinary team and connect with OHDSI working groups and local country node.
    • Pilot Testing & Evaluation – Conduct initial studies, refine processes, and scale implementations.
    • Advanced OMOP: AI & Swarm Learning.

Helsinki University Hospital’s OMOP Journey:

HUS has successfully transformed its healthcare data into OMOP CDM in close collaboration with FinOMOP and the other university hospitals in Finland, enabling:

  • Efficient data integration through version controlled national and international standards.
  • Participation in federated studies to generate real-world evidence; EHDEN, DARWIN, OHDSI, …
  • Advancing AI-driven research through swarm-learning – a form of federated machineleraning –   to collaboratively build decentralized predictive models.

The Value of the OHDSI Community. Joining OHDSI means access to:

  • A global research network for large-scale studies.
  • Open-source tools & best practices for OMOP adoption.
  • Education, training, and mentorship to accelerate both research and implementation.
Språk

English

Ämne

Data och information

Seminarietyp

Live + på plats

Föreläsningsformat

Presentation

Föreläsningssyfte

Orientering

Kunskapsnivå

Introduktion

Målgrupp

Chef/Beslutsfattare
Politiker
Verksamhetsutveckling
Tekniker/IT/Utvecklare
Forskare (även studerande)
Studerande

Nyckelord

Exempel från verkligheten (goda/dåliga)
Nytta/effekt
Innovation/forskning
Informatik/Interoperabilitet

Föreläsare

Eric Fey Föreläsare

Development Manager
Helsinki University Hospital

Eric Fey, PhD, MEng is a distinguished scientists in systems biology and medicine, currently spearheading the development of AI applications and federated learning at the Helsinki University Hospital. His roles include the Data Team Lead at the iCAN Digital Precision Cancer Medicine flagship, University of Helsinki; AI Development Manager, HUS Helsinki University Hospital; and National Node Lead, OHDSI Finland. With a PhD in Engineering and a strong background in system biology and data science, Eric has a proven track record in academia, entrepreneurship, and industry, including the 2017 Irish Laboratory Award for Collaboration Achievement, and a significant role as Assistant Professor at University College Dublin School of Medicine. His innovative work in establishing the swarm-learning capabilities across the Finnish university hospitals and a published proof-of-concept that mathematical models of cancer signalling can outperform classical biochemical biomarkers demonstrate his commitment to advancing precision medicine through technology.